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Claus Wilke
@clauswilke
We updated our survey of transfer learning with protein language models. Now it includes ESM C and AMPLIFY in addition to ESM-2 and ESMv. Quick conclusion: ESM C 600M is the model to use. But note reproducibility issues in next cast. 1/2 https://www.biorxiv.org/content/10.1101/2024.11.22.624936v2
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Claus Wilke
@clauswilke
We found that there are many pitfalls with reproducibility and in particular ESM C out of the box _will not_ give you reproducible embeddings. A major problem if you don't pay attention to it. Fortunately there are easy fixes. 2/2
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